Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_548

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8915 and 8916 are separated by 575 nucleotides8916 and 8917 are separated by 732 nucleotides mRNA_547: 8915 - KOG2385 Uncharacterized conserved protein, at 1,299,978 to 1,303,835 8915 mRNA_548: 8916 - K15084 SLC25A16, GDA, LEU5 solute carrier family 25 (mitochondrial carrier protein), member 16, at 1,304,411 to 1,305,873 8916 mRNA_549: 8917 - K12618 XRN1, SEP1, KEM1 5'-3' exoribonuclease 1, at 1,306,606 to 1,311,810 8917

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,303,820 + +1.1
1,303,862 + +0.2
1,303,950 - +0.1
1,304,010 - -0.7
1,304,021 + +0.5
1,304,021 - +0.4
1,304,151 + -2.2
1,304,156 - +1.0
1,304,291 - +0.0
1,304,536 + +0.1
1,305,915 - +0.4
1,305,918 - +0.3
1,305,925 + +1.2
1,305,929 - -0.9
1,305,942 + -0.9
1,305,948 + -1.0
1,305,954 + -1.5
1,306,065 + -0.7
1,306,081 + -0.3
1,306,099 + +0.7

Or see this region's nucleotide sequence