Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_648

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9015 and 9016 are separated by 286 nucleotides9016 and 9017 are separated by 168 nucleotides mRNA_647: 9015 - K09885 AQPF aquaporin rerated protein, other eukaryote, at 1,555,645 to 1,557,271 9015 mRNA_648: 9016 - K03424 tatD TatD DNase family protein, at 1,557,558 to 1,558,767 9016 mRNA_649: 9017 - K15192 BTAF1, MOT1 TATA-binding protein-associated factor, at 1,558,936 to 1,565,576 9017

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,557,153 + -0.1
1,557,207 + -0.7
1,557,516 + -0.1
1,557,591 + +0.6
1,557,679 + 9016 mRNA_648 0.10 -1.3
1,557,810 + 9016 mRNA_648 0.21 +3.2
1,557,892 + 9016 mRNA_648 0.28 +0.1
1,558,513 + 9016 mRNA_648 0.79 -1.0
1,558,515 - 9016 mRNA_648 0.79 -0.2
1,558,518 - 9016 mRNA_648 0.79 -1.8
1,558,521 - 9016 mRNA_648 0.80 +1.9
1,558,545 - 9016 mRNA_648 0.82 -3.3
1,558,661 + -1.1
1,558,678 - +0.2
1,558,693 + +0.5
1,558,817 + -0.9
1,558,822 - -2.3
1,558,829 + -1.2
1,558,839 - -1.2

Or see this region's nucleotide sequence