Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_661

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9028 and 9029 are separated by 754 nucleotides9029 and 9030 are separated by 352 nucleotides mRNA_660: 9028 - K13289 CTSA, CPY cathepsin A (carboxypeptidase C), at 1,590,128 to 1,592,290 9028 mRNA_661: 9029 - Hypothetical Protein, at 1,593,045 to 1,593,501 9029 mRNA_662: 9030 - HMMPfam-EF-hand domain pair-PF13499,ProSitePatterns-EF-hand calcium-binding domain.-PS00018,ProSiteProfiles-EF-hand calcium-binding domain profile.-PS50222,SUPERFAMILY--SSF47473, at 1,593,854 to 1,595,354 9030

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,592,070 + 9028 mRNA_660 0.90 +1.9
1,592,091 - +0.4
1,592,497 + +0.6
1,592,506 - +1.4
1,592,518 - -0.7
1,592,525 + +0.8
1,592,689 - -0.0
1,592,696 + +1.2
1,592,837 - -1.2
1,592,842 + -1.3
1,593,262 - 9029 mRNA_661 0.47 +0.1
1,593,436 - 9029 mRNA_661 0.86 +0.3
1,593,556 - -2.0
1,593,847 + +0.1
1,594,010 + 9030 mRNA_662 0.10 -0.2
1,594,119 - 9030 mRNA_662 0.18 +1.5
1,594,204 - 9030 mRNA_662 0.23 -0.1

Or see this region's nucleotide sequence