Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_699

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9066 and 9067 are separated by 234 nucleotides9067 and 9068 are separated by 220 nucleotides mRNA_698: 9066 - K12188 SNF8, EAP30 ESCRT-II complex subunit VPS22, at 1,668,031 to 1,668,867 9066 mRNA_699: 9067 - K20289 COG2 conserved oligomeric Golgi complex subunit 2, at 1,669,102 to 1,672,155 9067 mRNA_700: 9068 - K12398 AP3M AP-3 complex subunit mu, at 1,672,376 to 1,674,226 9068

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,668,472 - 9066 mRNA_698 0.53 -1.4
1,668,731 + 9066 mRNA_698 0.84 -3.6
1,668,740 + 9066 mRNA_698 0.85 -1.3
1,668,908 + -2.8
1,669,057 - -0.8
1,669,063 + -0.9
1,669,201 - +1.7
1,669,637 - 9067 mRNA_699 0.18 -1.1
1,669,639 - 9067 mRNA_699 0.18 +1.1
1,669,647 + 9067 mRNA_699 0.18 +0.3
1,670,565 + 9067 mRNA_699 0.48 +2.1
1,670,806 - 9067 mRNA_699 0.56 -1.0
1,670,882 + 9067 mRNA_699 0.58 +0.9
1,672,224 - -0.4
1,672,354 - -0.3
1,672,363 + +1.5
1,672,367 - -0.0
1,672,660 + 9068 mRNA_700 0.15 -0.1

Or see this region's nucleotide sequence