Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_711

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9078 and 9079 are separated by 549 nucleotides9079 and 9080 are separated by 210 nucleotides mRNA_710: 9078 - Hypothetical Protein, at 1,698,369 to 1,699,949 9078 mRNA_711: 9079 - K00972 UAP1 UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine diphosphorylase, at 1,700,499 to 1,702,038 9079 mRNA_712: 9080 - KOG4103 Mitochondrial F1F0-ATP synthase, subunit g/ATP20, at 1,702,249 to 1,703,188 9080

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,699,559 - 9078 mRNA_710 0.75 -0.4
1,699,578 + 9078 mRNA_710 0.76 +0.6
1,699,649 + 9078 mRNA_710 0.81 +1.3
1,699,701 - 9078 mRNA_710 0.84 -0.0
1,699,734 + 9078 mRNA_710 0.86 -0.2
1,699,948 - -0.5
1,700,043 + -1.1
1,700,175 + -1.3
1,700,189 + -1.5
1,700,280 - -2.6
1,700,378 - -0.5
1,700,452 + +0.2
1,702,209 - +1.6
1,702,649 + 9080 mRNA_712 0.43 +1.3

Or see this region's nucleotide sequence