Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_739

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9107 and 9108 are separated by 230 nucleotides mRNA_739: 9107 - K07359 CAMKK calcium/calmodulin-dependent protein kinase kinase, at 1,762,506 to 1,766,867 9107 mRNA_740: 9108 - K13103 TFIP11 tuftelin-interacting protein 11, at 1,767,098 to 1,770,950 9108

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,761,528 + +0.6
1,761,758 + -2.0
1,761,924 - +0.6
1,761,940 + -0.0
1,761,944 + +1.2
1,761,947 + -0.6
1,762,045 + +0.4
1,762,067 - -1.4
1,762,074 - +0.5
1,762,082 + -0.5
1,762,088 - +1.2
1,762,103 + -1.4
1,762,114 - -2.0
1,762,130 + -0.7
1,762,200 - -0.2
1,762,214 + -1.2
1,762,223 - +0.8
1,762,238 + -1.5
1,762,241 + +0.5
1,762,245 + +0.6
1,762,246 - -0.6
1,762,249 - +0.3
1,762,255 + +1.6
1,762,256 - -0.1
1,762,259 + +1.2
1,762,283 + +2.1
1,762,284 - -0.5
1,762,287 + -0.3
1,762,291 + -0.4
1,762,296 + -0.2
1,762,305 + +0.2
1,762,365 - -2.6
1,762,382 - -1.7
1,762,421 - +0.4
1,762,426 + +0.3
1,762,442 + -0.8
1,762,568 - +0.2
1,762,569 - +0.2
1,762,571 + -1.7
1,762,576 + +1.6
1,762,595 - +0.4
1,762,598 + +0.6
1,762,605 - -0.6
1,762,745 - +0.0
1,762,867 + -1.3
1,763,582 - 9107 mRNA_739 0.25 -1.8
1,764,300 + 9107 mRNA_739 0.41 -1.4
1,765,348 + 9107 mRNA_739 0.65 +1.1
1,765,348 + 9107 mRNA_739 0.65 -0.4
1,765,499 + 9107 mRNA_739 0.69 +1.0
1,765,767 + 9107 mRNA_739 0.75 +0.8
1,765,815 + 9107 mRNA_739 0.76 -2.5
1,766,100 + 9107 mRNA_739 0.82 +0.1
1,766,260 + 9107 mRNA_739 0.86 -0.2
1,767,067 - -0.2

Or see this region's nucleotide sequence