Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_763

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9130 and 9131 are separated by 405 nucleotides9131 and 9132 are separated by 163 nucleotides mRNA_762: 9130 - K11090 LA, SSB lupus La protein, at 1,820,887 to 1,822,873 9130 mRNA_763: 9131 - KOG4686 Predicted sugar transporter, at 1,823,279 to 1,825,136 9131 mRNA_764: 9132 - Hypothetical Protein, at 1,825,300 to 1,826,373 9132

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,822,576 - 9130 mRNA_762 0.85 -0.0
1,822,691 - +1.3
1,822,989 - -1.2
1,822,989 + +1.0
1,823,143 - -0.4
1,823,170 - +0.5
1,823,175 + -0.6
1,823,192 + -0.0
1,823,319 - -2.7
1,823,455 + -1.6
1,823,607 + 9131 mRNA_763 0.18 -0.0
1,824,194 - 9131 mRNA_763 0.49 +0.2
1,824,212 - 9131 mRNA_763 0.50 +1.7
1,824,337 - 9131 mRNA_763 0.57 +2.4
1,825,058 - +0.4
1,825,100 + -0.1
1,825,236 - +0.3
1,825,262 + +1.2
1,825,335 + +0.9
1,825,515 + 9132 mRNA_764 0.20 +1.7
1,825,664 + 9132 mRNA_764 0.34 +0.4
1,825,972 - 9132 mRNA_764 0.63 -1.0
1,825,979 + 9132 mRNA_764 0.63 +0.4
1,826,119 - 9132 mRNA_764 0.76 -0.6

Or see this region's nucleotide sequence