Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_775

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9142 and 9143 are separated by 371 nucleotides9143 and 9144 are separated by 233 nucleotides mRNA_774: 9142 - K17457 PPP1R12C, MBS85 protein phosphatase 1 regulatory subunit 12C, at 1,840,086 to 1,841,880 9142 mRNA_775: 9143 - Hypothetical Protein, at 1,842,252 to 1,843,593 9143 mRNA_776: 9144 - BLAST NADH-ubiquinone oxidoreductase kD subunit [Pseudo..., at 1,843,827 to 1,844,410 9144

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,841,397 + 9142 mRNA_774 0.73 +1.0
1,841,440 + 9142 mRNA_774 0.75 -2.4
1,841,863 - +0.1
1,842,194 + +0.1
1,842,642 + 9143 mRNA_775 0.29 -0.3
1,842,643 - 9143 mRNA_775 0.29 +0.5
1,842,808 + 9143 mRNA_775 0.41 +1.0
1,843,207 + 9143 mRNA_775 0.71 -1.1
1,843,246 - 9143 mRNA_775 0.74 +0.1
1,843,385 + 9143 mRNA_775 0.84 +0.5
1,843,407 + 9143 mRNA_775 0.86 +1.1
1,843,566 - +0.3
1,843,798 + +1.0

Or see this region's nucleotide sequence