Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_787

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9153 and 9154 are separated by 115 nucleotides9154 and 9155 are separated by 237 nucleotides9155 and 9156 are separated by 285 nucleotides mRNA_785: 9153 - K07305 msrB peptide-methionine (R)-S-oxide reductase, at 1,868,475 to 1,869,401 9153 mRNA_786: 9154 - Hypothetical Protein, at 1,869,517 to 1,870,125 9154 mRNA_787: 9155 - K17804 TIM44 mitochondrial import inner membrane translocase subunit TIM44, at 1,870,363 to 1,872,119 9155 mRNA_788: 9156 - Hypothetical Protein, at 1,872,405 to 1,873,287 9156

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,869,429 + +1.0
1,869,434 - -1.5
1,869,452 - -1.0
1,869,574 - +0.5
1,869,720 + 9154 mRNA_786 0.33 +0.4
1,869,742 + 9154 mRNA_786 0.37 -0.2
1,869,780 + 9154 mRNA_786 0.43 +0.6
1,869,835 + 9154 mRNA_786 0.52 +1.2
1,869,882 - 9154 mRNA_786 0.60 -0.1
1,870,001 - 9154 mRNA_786 0.79 +0.6
1,870,165 - -0.2
1,870,166 + -0.4
1,870,307 - -0.5
1,870,314 + -0.3
1,870,319 - -0.2
1,870,321 + -0.6
1,870,322 + +0.2
1,870,329 + -1.4
1,872,372 - -0.5
1,872,653 - 9156 mRNA_788 0.28 -1.5

Or see this region's nucleotide sequence