Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_813

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9180 and 9181 are separated by 261 nucleotides9181 and 9182 are separated by 522 nucleotides mRNA_812: 9180 - K00474 TMLHE trimethyllysine dioxygenase, at 1,932,438 to 1,934,306 9180 mRNA_813: 9181 - KOG1515 Arylacetamide deacetylase, at 1,934,568 to 1,937,031 9181 mRNA_814: 9182 - K15075 MET18, MMS19 DNA repair/transcription protein MET18/MMS19, at 1,937,554 to 1,941,739 9182

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,934,341 + -0.4
1,934,447 - -2.3
1,934,614 + +0.7
1,935,085 - 9181 mRNA_813 0.21 +0.3
1,935,327 - 9181 mRNA_813 0.31 +0.2
1,935,490 - 9181 mRNA_813 0.37 +2.2
1,935,647 - 9181 mRNA_813 0.44 -0.2
1,936,065 + 9181 mRNA_813 0.61 -0.3
1,936,226 - 9181 mRNA_813 0.67 +0.1
1,936,509 + 9181 mRNA_813 0.79 -0.6
1,936,623 - 9181 mRNA_813 0.83 +0.7
1,936,632 + 9181 mRNA_813 0.84 -0.8
1,936,651 - 9181 mRNA_813 0.85 -0.8
1,936,689 + 9181 mRNA_813 0.86 -1.6
1,936,700 + 9181 mRNA_813 0.87 +0.8
1,936,701 - 9181 mRNA_813 0.87 +0.3
1,936,806 + -1.4
1,936,954 - +0.8
1,936,994 - +0.1
1,937,086 - -1.2
1,937,095 - -1.1
1,937,106 + -0.6
1,937,113 - -1.0
1,937,115 + -0.1
1,937,147 - +1.2
1,937,160 + -0.1
1,937,210 + +0.2
1,937,293 - -2.4
1,937,301 - -0.4
1,937,305 + -0.5
1,937,308 + -1.0
1,937,311 - +2.1
1,937,342 - -1.3
1,937,351 + +1.3
1,937,371 - +0.5
1,937,419 - -0.2
1,937,421 - -0.1
1,937,427 + -2.0

Or see this region's nucleotide sequence