Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_926

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9294 and 9295 are separated by 270 nucleotides mRNA_926: 9294 - K20647 ARHGAP32 Rho GTPase-activating protein 32, at 2,208,213 to 2,211,495 9294 mRNA_927: 9295 - KOG1611 Predicted short chain-type dehydrogenase, at 2,211,766 to 2,213,032 9295

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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2,207,237 + +1.7
2,207,350 + -0.4
2,207,373 - -1.4
2,207,528 + +0.2
2,207,556 - -1.1
2,207,606 - -1.3
2,207,643 - +0.7
2,207,653 - +3.4
2,207,791 + -0.8
2,207,794 - -0.7
2,207,801 - -2.4
2,207,803 + -1.4
2,207,806 - +0.9
2,207,813 + -0.8
2,207,815 - -1.4
2,207,823 + -1.9
2,207,825 - -0.5
2,207,927 - -0.8
2,207,948 + -0.2
2,207,965 - +0.9
2,207,966 + +0.1
2,207,968 - -1.0
2,207,973 + +0.5
2,208,099 - +0.5
2,208,208 - +0.3
2,208,216 - -0.2
2,208,345 - -0.5
2,208,402 - -0.0
2,208,424 + -0.4
2,208,573 - 9294 mRNA_926 0.11 -0.7
2,208,595 + 9294 mRNA_926 0.12 +1.4
2,208,627 - 9294 mRNA_926 0.13 +1.1
2,208,648 - 9294 mRNA_926 0.13 -0.5
2,208,667 - 9294 mRNA_926 0.14 -3.2
2,208,691 + 9294 mRNA_926 0.15 +0.1
2,208,729 - 9294 mRNA_926 0.16 -0.8
2,208,729 - 9294 mRNA_926 0.16 -3.2
2,208,746 - 9294 mRNA_926 0.16 -1.2
2,208,763 - 9294 mRNA_926 0.17 -1.6
2,208,841 + 9294 mRNA_926 0.19 +0.0
2,208,921 - 9294 mRNA_926 0.22 -3.5
2,208,984 - 9294 mRNA_926 0.23 +2.9
2,209,066 - 9294 mRNA_926 0.26 -0.5
2,209,066 - 9294 mRNA_926 0.26 -0.7
2,209,073 + 9294 mRNA_926 0.26 -0.7
2,209,117 + 9294 mRNA_926 0.28 +0.9
2,209,273 + 9294 mRNA_926 0.32 +0.6
2,209,330 - 9294 mRNA_926 0.34 -1.0
2,209,331 + 9294 mRNA_926 0.34 -0.0
2,209,341 - 9294 mRNA_926 0.34 +1.3
2,209,397 - 9294 mRNA_926 0.36 +1.0
2,209,551 + 9294 mRNA_926 0.41 +1.7
2,209,573 - 9294 mRNA_926 0.41 -2.5
2,209,693 - 9294 mRNA_926 0.45 +0.7
2,209,826 + 9294 mRNA_926 0.49 +0.5
2,209,844 - 9294 mRNA_926 0.50 -0.0
2,209,857 + 9294 mRNA_926 0.50 -0.8
2,209,980 - 9294 mRNA_926 0.54 -1.5
2,210,060 - 9294 mRNA_926 0.56 -1.8
2,210,083 - 9294 mRNA_926 0.57 +1.3
2,210,159 - 9294 mRNA_926 0.59 +1.8
2,210,235 - 9294 mRNA_926 0.62 -2.3
2,210,272 + 9294 mRNA_926 0.63 +0.9
2,210,334 - 9294 mRNA_926 0.65 -3.7
2,210,370 - 9294 mRNA_926 0.66 +0.1
2,210,372 - 9294 mRNA_926 0.66 +1.1
2,210,415 + 9294 mRNA_926 0.67 +0.4
2,210,425 - 9294 mRNA_926 0.67 +0.5
2,210,425 - 9294 mRNA_926 0.67 +0.2
2,210,431 - 9294 mRNA_926 0.68 -3.2
2,210,442 + 9294 mRNA_926 0.68 -0.7
2,210,448 - 9294 mRNA_926 0.68 -1.8
2,210,454 + 9294 mRNA_926 0.68 -1.3
2,210,602 - 9294 mRNA_926 0.73 -1.1
2,210,619 - 9294 mRNA_926 0.73 -2.1
2,210,649 + 9294 mRNA_926 0.74 +1.1
2,210,717 - 9294 mRNA_926 0.76 +1.5
2,210,745 - 9294 mRNA_926 0.77 -0.7
2,210,747 + 9294 mRNA_926 0.77 -2.3
2,210,752 - 9294 mRNA_926 0.77 -0.0
2,210,848 - 9294 mRNA_926 0.80 -0.9
2,211,008 + 9294 mRNA_926 0.85 -0.3
2,211,138 - 9294 mRNA_926 0.89 -0.7
2,211,230 + +0.5
2,211,261 - +0.6
2,211,269 - +0.2
2,211,293 + -0.1
2,211,385 - +1.2
2,211,610 - -0.0
2,211,627 - +0.3
2,211,678 + +0.8
2,211,681 + +0.4
2,211,723 + -0.9
2,211,723 + -1.0
2,211,723 + -0.3
2,211,758 + -0.7
2,211,787 - +0.1
2,211,902 + 9295 mRNA_927 0.11 +0.3
2,211,904 - 9295 mRNA_927 0.11 -0.6
2,211,935 + 9295 mRNA_927 0.13 +4.3
2,211,944 + 9295 mRNA_927 0.14 -0.2
2,212,030 - 9295 mRNA_927 0.21 -1.2
2,212,032 - 9295 mRNA_927 0.21 -0.7
2,212,035 - 9295 mRNA_927 0.21 -0.4
2,212,043 + 9295 mRNA_927 0.22 +1.9
2,212,065 - 9295 mRNA_927 0.24 +0.2
2,212,097 + 9295 mRNA_927 0.26 -1.5
2,212,200 - 9295 mRNA_927 0.34 +0.1
2,212,205 + 9295 mRNA_927 0.35 +1.2
2,212,286 - 9295 mRNA_927 0.41 -1.6
2,212,309 + 9295 mRNA_927 0.43 -0.4
2,212,330 + 9295 mRNA_927 0.45 +1.2
2,212,333 - 9295 mRNA_927 0.45 +0.8
2,212,333 - 9295 mRNA_927 0.45 -0.2
2,212,365 - 9295 mRNA_927 0.47 -1.0
2,212,368 + 9295 mRNA_927 0.48 -0.2
2,212,489 + 9295 mRNA_927 0.57 +0.3
2,212,492 + 9295 mRNA_927 0.57 -0.8
2,212,494 + 9295 mRNA_927 0.57 -1.9

Or see this region's nucleotide sequence