Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_948

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9315 and 9316 are separated by 119 nucleotides9316 and 9317 are separated by 442 nucleotides mRNA_947: 9315 - K00623 CHAT choline O-acetyltransferase, at 38,984 to 41,581 9315 mRNA_948: 9316 - KOG2641 Predicted seven transmembrane receptor - rhodopsin family, at 41,701 to 44,858 9316 mRNA_949: 9317 - KOG1268 Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains, at 45,301 to 46,716 9317

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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41,053 - 9315 mRNA_947 0.80 +0.9
41,213 + 9315 mRNA_947 0.86 -0.1
41,256 - 9315 mRNA_947 0.87 -1.0
41,491 + +0.2
41,509 - -0.6
41,539 + +1.3
41,611 - +0.3
41,633 - -1.5
41,633 - +0.8
41,645 + +0.2
41,656 + -0.4
41,659 + +1.3
41,665 + -0.7
41,671 + +1.6
41,806 - -0.9
41,993 + +2.1
42,116 - 9316 mRNA_948 0.13 +0.0
42,122 + 9316 mRNA_948 0.13 -0.5
42,180 + 9316 mRNA_948 0.15 +0.4
42,265 + 9316 mRNA_948 0.18 -0.3
42,398 - 9316 mRNA_948 0.22 +0.4
42,441 + 9316 mRNA_948 0.23 +0.0
42,665 - 9316 mRNA_948 0.31 -2.7
42,879 + 9316 mRNA_948 0.37 +0.2
43,018 - 9316 mRNA_948 0.42 +0.8
43,143 + 9316 mRNA_948 0.46 +0.2
43,150 - 9316 mRNA_948 0.46 +2.8
43,605 - 9316 mRNA_948 0.60 +0.6
43,688 - 9316 mRNA_948 0.63 -1.4
43,864 + 9316 mRNA_948 0.68 -1.1
44,000 - 9316 mRNA_948 0.73 +0.8
44,001 - 9316 mRNA_948 0.73 -0.3
44,022 + 9316 mRNA_948 0.73 +0.6
44,172 - 9316 mRNA_948 0.78 -0.3
44,297 - 9316 mRNA_948 0.82 -1.2
44,503 - 9316 mRNA_948 0.89 +0.2
44,900 + +1.1
45,025 + -0.0
45,026 - +0.2
45,037 + -0.1
45,044 + -0.1
45,056 + +0.3
45,188 + -0.2
45,342 + +2.2
45,465 + 9317 mRNA_949 0.12 +0.2
45,482 - 9317 mRNA_949 0.13 -0.2
45,484 + 9317 mRNA_949 0.13 +0.0
45,586 + 9317 mRNA_949 0.20 +0.1
45,590 + 9317 mRNA_949 0.20 +0.4
45,590 - 9317 mRNA_949 0.20 +0.9
45,596 - 9317 mRNA_949 0.21 +2.3
45,619 + 9317 mRNA_949 0.22 -0.6
45,755 - 9317 mRNA_949 0.32 -0.0

Or see this region's nucleotide sequence