Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_978

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9345 and 9346 are separated by 460 nucleotides9346 and 9347 are separated by 314 nucleotides mRNA_977: 9345 - KOG1378 Purple acid phosphatase, at 122,098 to 123,952 9345 mRNA_978: 9346 - Hypothetical Protein, at 124,413 to 124,580 9346 mRNA_979: 9347 - K03123 TFIIA2, GTF2A2, TOA2 transcription initiation factor TFIIA small subunit, at 124,895 to 125,472 9347

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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123,478 - 9345 mRNA_977 0.74 -1.2
123,613 + 9345 mRNA_977 0.82 -1.3
124,118 + -0.2
124,273 - +0.0
124,404 - -1.1
124,408 + +0.3
124,532 - 9346 mRNA_978 0.71 -1.0
124,541 + 9346 mRNA_978 0.76 -0.2
124,683 + +0.5
124,703 - +0.8
124,717 + -0.1
124,722 + +0.8
124,838 - +1.1
124,852 - -0.3
124,855 - -1.2

Or see this region's nucleotide sequence