Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1016

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9383 and 9384 are separated by 371 nucleotides9384 and 9385 are separated by 200 nucleotides mRNA_1015: 9383 - HMMPfam-Thioesterase superfamily-PF03061,SUPERFAMILY--SSF54637, at 213,676 to 214,574 9383 mRNA_1016: 9384 - K14833 NOC2 nucleolar complex protein 2, at 214,946 to 217,442 9384 mRNA_1017: 9385 - BLAST putative pre-mrna-splicing factor 38b [Diaporthe ampe..., at 217,643 to 219,086 9385

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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213,980 - 9383 mRNA_1015 0.34 -1.6
214,159 - 9383 mRNA_1015 0.54 -0.9
214,184 - 9383 mRNA_1015 0.57 -1.1
214,197 + 9383 mRNA_1015 0.58 +0.4
214,208 + 9383 mRNA_1015 0.59 -0.1
214,222 - 9383 mRNA_1015 0.61 +0.2
214,333 - 9383 mRNA_1015 0.73 +0.6
214,353 + 9383 mRNA_1015 0.75 +0.2
214,453 + 9383 mRNA_1015 0.86 -1.1
214,466 + 9383 mRNA_1015 0.88 +1.0
214,467 - 9383 mRNA_1015 0.88 +1.0
214,474 - 9383 mRNA_1015 0.89 -0.9
214,597 - -1.5
214,600 + +1.4
214,600 + +1.5
214,611 + +1.2
214,611 - -2.3
214,622 - -0.1
214,627 + +0.0
214,636 - -1.2
214,754 + +0.9
214,760 - +1.1
214,765 - -0.1
214,767 - -1.6
214,786 - +1.0
217,450 - -0.5
217,897 + 9385 mRNA_1017 0.18 +1.4

Or see this region's nucleotide sequence