Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1144

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9511 and 9512 are separated by 104 nucleotides9512 and 9513 are separated by 772 nucleotides mRNA_1143: 9511 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 505,667 to 510,461 9511 mRNA_1144: 9512 - K13355 NUDT19 nucleoside diphosphate-linked moiety X motif 19, mitochondrial, at 510,566 to 511,961 9512 mRNA_1145: 9513 - K00669 AANAT arylalkylamine N-acetyltransferase, at 512,734 to 513,942 9513

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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510,078 + +0.3
510,135 + +1.1
510,302 - -0.8
510,587 - -2.2
510,591 + -1.3
510,717 + 9512 mRNA_1144 0.11 -0.1
510,728 - 9512 mRNA_1144 0.12 +1.6
510,733 + 9512 mRNA_1144 0.12 -0.9
511,071 - 9512 mRNA_1144 0.36 +1.0
511,465 - 9512 mRNA_1144 0.64 +1.7
511,469 - 9512 mRNA_1144 0.65 +0.9
511,507 + 9512 mRNA_1144 0.67 -2.8
511,917 + -0.6
511,961 - +1.2
512,074 + -3.0
512,088 + +0.2
512,095 + +1.2
512,226 + +0.9
512,228 + +0.6
512,356 - +0.8
512,392 + +0.1
512,396 + +1.6
512,427 + -1.0
512,429 - -0.1
512,431 + +0.2
512,529 + -0.7
512,815 + -2.1

Or see this region's nucleotide sequence