Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1152

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9519 and 9520 are separated by 537 nucleotides9520 and 9521 are separated by 108 nucleotides mRNA_1151: 9519 - Hypothetical Protein, at 521,808 to 522,539 9519 mRNA_1152: 9520 - KOG0069 Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily), at 523,077 to 524,441 9520 mRNA_1153: 9521 - K13513 LCLAT1, AGPAT8 lysocardiolipin and lysophospholipid acyltransferase, at 524,550 to 526,104 9521

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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522,358 - 9519 mRNA_1151 0.75 -2.2
522,516 - +1.1
522,540 + -0.8
522,615 + +1.3
522,692 - -1.6
522,695 + -0.3
522,713 - -0.4
522,849 + +0.1
522,853 - -1.6
522,861 + -0.7
522,864 - +0.9
522,866 - -0.5
522,867 - +0.3
522,867 + -0.9
522,971 - -2.4
523,449 - 9520 mRNA_1152 0.27 -0.2
523,628 - 9520 mRNA_1152 0.40 +0.0
523,844 + 9520 mRNA_1152 0.56 +0.2
523,894 - 9520 mRNA_1152 0.60 +1.5
524,045 - 9520 mRNA_1152 0.71 -0.2
524,148 - 9520 mRNA_1152 0.78 +0.4
524,178 - 9520 mRNA_1152 0.81 +1.3
524,639 - -0.5
524,833 + 9521 mRNA_1153 0.18 -2.1

Or see this region's nucleotide sequence