Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1154

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9521 and 9522 are separated by 492 nucleotides9522 and 9523 are separated by 838 nucleotides mRNA_1153: 9521 - K13513 LCLAT1, AGPAT8 lysocardiolipin and lysophospholipid acyltransferase, at 524,550 to 526,104 9521 mRNA_1154: 9522 - Hypothetical Protein, at 526,597 to 527,643 9522 mRNA_1155: 9523 - ProSiteProfiles-CBS domain profile.-PS51371,SUPERFAMILY--SSF54631, at 528,482 to 529,504 9523

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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525,743 + 9521 mRNA_1153 0.77 +1.4
525,769 + 9521 mRNA_1153 0.78 -0.8
526,021 - -3.0
526,177 + -1.1
526,446 + -0.8
526,479 - -1.1
526,481 + +1.5
526,508 + -0.9
526,509 - +1.0
526,605 - +1.6
526,761 + 9522 mRNA_1154 0.16 +1.8
526,771 + 9522 mRNA_1154 0.17 -2.9
526,941 - 9522 mRNA_1154 0.33 +1.3
526,952 + 9522 mRNA_1154 0.34 -1.4
526,954 - 9522 mRNA_1154 0.34 -1.5
527,218 + 9522 mRNA_1154 0.59 +0.7
527,551 - -1.5
527,656 + +0.2
528,215 - -1.3
528,373 - -0.2
528,439 - -0.2
528,537 + -0.7

Or see this region's nucleotide sequence