Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1166

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9533 and 9534 are separated by 415 nucleotides9534 and 9535 are separated by 526 nucleotides mRNA_1165: 9533 - HMMPfam-Protein of unknown function (DUF1445)-PF07286,PIRSF--PIRSF029755,SUPERFAMILY--SSF160920, at 553,391 to 554,372 9533 mRNA_1166: 9534 - KOG2533 Permease of the major facilitator superfamily, at 554,788 to 557,060 9534 mRNA_1167: 9535 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 557,587 to 560,660 9535

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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554,014 - 9533 mRNA_1165 0.63 -0.9
554,023 - 9533 mRNA_1165 0.64 +0.9
554,278 - +0.3
554,286 + +1.0
554,351 + -0.1
554,544 + +0.1
554,563 - +0.2
554,625 - -0.9
554,710 - -0.6
555,124 + 9534 mRNA_1166 0.15 +0.7
555,178 + 9534 mRNA_1166 0.17 -0.1
555,341 + 9534 mRNA_1166 0.24 +0.1
555,344 - 9534 mRNA_1166 0.24 -1.4
555,770 - 9534 mRNA_1166 0.43 +1.5
555,872 - 9534 mRNA_1166 0.48 +0.2
555,913 - 9534 mRNA_1166 0.49 +0.4
555,917 - 9534 mRNA_1166 0.50 +0.3
555,929 + 9534 mRNA_1166 0.50 -1.6
556,084 + 9534 mRNA_1166 0.57 -0.0
556,348 + 9534 mRNA_1166 0.69 -1.6
556,355 + 9534 mRNA_1166 0.69 +0.6
556,380 - 9534 mRNA_1166 0.70 -0.1
556,488 + 9534 mRNA_1166 0.75 +0.6
556,550 - 9534 mRNA_1166 0.78 +1.9
556,662 + 9534 mRNA_1166 0.82 +0.4
556,761 - 9534 mRNA_1166 0.87 -0.4
556,788 - 9534 mRNA_1166 0.88 +1.0
556,803 + 9534 mRNA_1166 0.89 -0.9
556,807 + 9534 mRNA_1166 0.89 +0.6
556,931 - +0.6
557,108 + -0.9
557,148 - +0.2
557,295 - -0.0
557,371 + -1.8
557,384 + +0.9
557,390 - +0.8
557,396 - +0.6
557,405 + +0.3
557,405 + -0.2
557,508 - +0.8
557,508 - -1.1
557,519 - -0.2
557,536 - -0.0
557,549 + -0.5
557,570 - +0.8
557,578 - +0.9
557,590 - -1.3
557,686 + +0.2
557,692 - -1.7
557,762 + -0.2
558,015 + 9535 mRNA_1167 0.14 -1.1

Or see this region's nucleotide sequence