Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1178

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9545 and 9546 are separated by 161 nucleotides9546 and 9547 are separated by 265 nucleotides mRNA_1177: 9545 - K15326 TSEN54 tRNA-splicing endonuclease subunit Sen54, at 580,188 to 581,963 9545 mRNA_1178: 9546 - Hypothetical Protein, at 582,125 to 583,749 9546 mRNA_1179: 9547 - K12611 DCP1B mRNA-decapping enzyme 1B, at 584,015 to 586,277 9547

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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582,045 + +0.8
582,060 - +2.7
582,084 + -1.7
582,207 + +2.2
582,254 + -1.0
582,552 - 9546 mRNA_1178 0.26 -1.1
583,043 - 9546 mRNA_1178 0.56 +2.5
583,070 + 9546 mRNA_1178 0.58 +0.2
583,368 + 9546 mRNA_1178 0.76 -1.0
583,942 + -0.0
583,942 + -2.1
583,964 + -0.5
583,966 + +0.2
584,696 + 9547 mRNA_1179 0.30 +0.8

Or see this region's nucleotide sequence