Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1243

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9610 and 9611 are separated by 106 nucleotides9611 and 9612 are separated by 381 nucleotides mRNA_1242: 9610 - K01110 PTEN phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, at 736,191 to 738,180 9610 mRNA_1243: 9611 - K02493 hemK, prmC, HEMK release factor glutamine methyltransferase, at 738,287 to 739,305 9611 mRNA_1244: 9612 - SUPERFAMILY--SSF52047, at 739,687 to 741,319 9612

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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737,909 + 9610 mRNA_1242 0.86 +3.4
737,973 - 9610 mRNA_1242 0.90 -1.7
737,973 - 9610 mRNA_1242 0.90 -0.2
738,159 + -0.4
738,167 - -1.7
738,170 + -1.7
738,508 - 9611 mRNA_1243 0.22 +0.3
739,182 + 9611 mRNA_1243 0.88 +0.3
739,310 + -1.1
739,455 - +0.6
739,458 - +0.5
739,461 + -1.4
739,480 + +0.8
739,596 - +0.0
739,606 - +2.7
739,609 - +0.8
739,628 - +0.3
739,634 - -0.2
739,635 + -1.0
739,639 + +1.7
739,770 + -0.1
739,771 - -2.4
739,778 + +1.4
739,782 + +1.0
739,914 - 9612 mRNA_1244 0.14 +0.1
739,918 - 9612 mRNA_1244 0.14 +1.9
739,963 - 9612 mRNA_1244 0.17 -1.1

Or see this region's nucleotide sequence