Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1276

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9643 and 9644 are separated by 172 nucleotides9644 and 9645 are separated by 151 nucleotides mRNA_1275: 9643 - K11426 SMYD SET and MYND domain-containing protein, at 813,494 to 815,725 9643 mRNA_1276: 9644 - K01070 frmB, ESD, fghA S-formylglutathione hydrolase, at 815,898 to 817,599 9644 mRNA_1277: 9645 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 817,751 to 818,897 9645

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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815,057 + 9643 mRNA_1275 0.70 -0.7
815,061 + 9643 mRNA_1275 0.70 +0.1
815,378 - 9643 mRNA_1275 0.84 +0.7
815,490 - 9643 mRNA_1275 0.89 +0.1
815,500 + 9643 mRNA_1275 0.90 +1.5
815,519 + -1.4
815,755 - +0.3
815,790 + +0.3
815,793 - -0.3
815,806 + +0.5
816,101 + 9644 mRNA_1276 0.12 +1.2
816,535 + 9644 mRNA_1276 0.37 +2.3
816,554 + 9644 mRNA_1276 0.39 +0.4
816,874 + 9644 mRNA_1276 0.57 -0.9
816,875 - 9644 mRNA_1276 0.57 -0.1
817,059 + 9644 mRNA_1276 0.68 +0.7
817,420 + 9644 mRNA_1276 0.89 -0.6
817,493 + -1.1
817,794 - -1.0
818,402 + 9645 mRNA_1277 0.57 +0.7
818,512 + 9645 mRNA_1277 0.66 +0.3
818,527 - 9645 mRNA_1277 0.68 +1.8
818,533 + 9645 mRNA_1277 0.68 +1.5
818,536 + 9645 mRNA_1277 0.68 +0.2

Or see this region's nucleotide sequence