Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1314

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9681 and 9682 are separated by 76 nucleotides9682 and 9683 are separated by 310 nucleotides mRNA_1313: 9681 - K18586 COQ4 ubiquinone biosynthesis protein COQ4, at 899,642 to 900,633 9681 mRNA_1314: 9682 - BLAST carboxymethylenebutenolidase [Rhizoctonia solani AG-1..., at 900,710 to 903,135 9682 mRNA_1315: 9683 - K12813 DHX16 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, at 903,446 to 907,323 9683

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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900,593 - +0.1
900,862 - -0.1
900,880 + +0.4
900,887 + +1.2
901,483 + 9682 mRNA_1314 0.32 +2.1
901,486 - 9682 mRNA_1314 0.32 +1.8
902,471 + 9682 mRNA_1314 0.73 -0.2
902,782 + 9682 mRNA_1314 0.85 -0.6
902,902 + -0.5
903,185 + -0.7
903,194 - -0.5

Or see this region's nucleotide sequence