Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1363

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9731 and 9732 are separated by 779 nucleotides mRNA_1363: 9731 - K11147 DHRS4 dehydrogenase/reductase SDR family member 4, at 98,069 to 99,768 9731 mRNA_1364: 9732 - SUPERFAMILY--SSF48452, at 100,548 to 102,445 9732

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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97,398 - +0.9
97,433 + -0.8
97,563 + +0.9
97,720 + +1.3
97,730 - -2.3
97,840 - +0.5
97,848 + -0.3
97,849 - -1.2
97,854 - -1.6
97,859 + +0.9
97,860 - +1.4
97,873 - -0.5
97,873 + -0.7
97,876 - -3.1
97,877 + +0.9
97,884 + +0.1
97,886 + +0.4
97,888 + +0.0
97,996 - +0.2
98,001 + -1.6
98,002 - -0.7
98,002 + -0.4
98,005 + +1.8
98,006 - +0.9
98,007 + -0.3
98,008 + +0.7
98,166 + -0.1
98,325 + 9731 mRNA_1363 0.15 +0.8
98,349 - 9731 mRNA_1363 0.16 -0.3
98,460 + 9731 mRNA_1363 0.23 -0.3
98,492 + 9731 mRNA_1363 0.25 +0.5
98,623 - 9731 mRNA_1363 0.33 +0.2
98,706 + 9731 mRNA_1363 0.37 +0.6
98,761 - 9731 mRNA_1363 0.41 +1.7
98,915 + 9731 mRNA_1363 0.50 -0.0
99,047 - 9731 mRNA_1363 0.58 +0.6
99,303 + 9731 mRNA_1363 0.73 +1.4
99,605 + -0.5
99,769 - +1.3
99,905 - +0.0
99,910 + +0.3
99,921 + +0.5
99,927 + +0.7
99,929 + -0.6
99,956 - -0.5
100,052 + -1.3
100,211 - -0.1
100,243 - +1.1
100,386 + -0.6

Or see this region's nucleotide sequence