Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1368

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9735 and 9736 are separated by 281 nucleotides9736 and 9737 are separated by 176 nucleotides mRNA_1367: 9735 - K03233 EEF1G elongation factor 1-gamma, at 106,812 to 108,790 9735 mRNA_1368: 9736 - K03233 EEF1G elongation factor 1-gamma, at 109,072 to 110,968 9736 mRNA_1369: 9737 - HMMPfam-Glutathione S-transferase, N-terminal domain-PF13417,ProSiteProfiles-Soluble glutathione S-transferase N-terminal domain profile.-PS50404,ProSiteProfiles-Soluble glutathione S-transferase C-terminal domain profile.-PS50405,SUPERFAMILY--SSF52833, at 111,145 to 112,135 9737

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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108,237 + 9735 mRNA_1367 0.72 +1.8
108,573 - 9735 mRNA_1367 0.89 +1.9
108,710 - +0.8
108,849 + +0.6
108,856 + +0.4
108,862 - -1.3
108,865 + +0.3
108,999 - -0.8
109,812 + 9736 mRNA_1368 0.39 +1.0
110,135 - 9736 mRNA_1368 0.56 +0.0
110,704 + 9736 mRNA_1368 0.86 +0.2
110,709 - 9736 mRNA_1368 0.86 -0.7
110,727 - 9736 mRNA_1368 0.87 -1.0
110,744 - 9736 mRNA_1368 0.88 -1.8
110,865 - -0.8
110,867 - +1.2
110,867 + +0.7
111,008 - -0.0
111,023 + +0.1
111,047 - +0.5
111,048 + -0.2
111,181 - +0.9
111,182 - -0.1
111,195 - -0.5
111,332 + 9737 mRNA_1369 0.19 -0.7
111,344 - 9737 mRNA_1369 0.20 -1.5
111,588 + 9737 mRNA_1369 0.45 +0.2
111,749 + 9737 mRNA_1369 0.61 -0.9
111,770 + 9737 mRNA_1369 0.63 +0.8

Or see this region's nucleotide sequence