Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1386

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9753 and 9754 are separated by 657 nucleotides9754 and 9755 are separated by 195 nucleotides mRNA_1385: 9753 - K06966 K06966 uncharacterized protein, at 145,892 to 146,941 9753 mRNA_1386: 9754 - K06966 K06966 uncharacterized protein, at 147,599 to 148,550 9754 mRNA_1387: 9755 - BLAST bromodomain-containing protein 8 [Cryptococcus ne..., at 148,746 to 149,519 9755

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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146,618 - 9753 mRNA_1385 0.69 +0.4
146,748 - 9753 mRNA_1385 0.82 -0.4
146,924 - +0.6
146,958 + -0.3
147,043 - -1.0
147,053 - -0.9
147,074 + -1.4
147,512 - +0.3
147,657 - -0.7
147,674 + +0.7
148,066 + 9754 mRNA_1386 0.49 +0.6
148,071 - 9754 mRNA_1386 0.50 -1.5
148,205 + 9754 mRNA_1386 0.64 -1.6
148,213 + 9754 mRNA_1386 0.64 -3.4
148,517 - -0.8
148,551 + +0.0
148,799 + +1.6
148,816 + -1.4
148,820 - -2.5
148,831 + 9755 mRNA_1387 0.11 -0.5
148,841 - 9755 mRNA_1387 0.12 +0.7
148,956 - 9755 mRNA_1387 0.27 +0.4
149,117 - 9755 mRNA_1387 0.48 +1.6
149,131 - 9755 mRNA_1387 0.50 -1.7
149,135 + 9755 mRNA_1387 0.50 +1.2
149,137 - 9755 mRNA_1387 0.51 +3.2
149,138 + 9755 mRNA_1387 0.51 +0.5
149,278 - 9755 mRNA_1387 0.69 -0.2
149,404 - 9755 mRNA_1387 0.85 -2.1
149,417 + 9755 mRNA_1387 0.87 +0.3

Or see this region's nucleotide sequence