Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1389

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9757 and 9758 are separated by 406 nucleotides mRNA_1389: 9757 - Hypothetical Protein, at 155,335 to 156,152 9757 mRNA_1390: 9758 - KOG0988 RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference, at 156,559 to 159,898 9758

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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154,755 - +1.2
154,788 + +1.6
154,918 - +0.4
155,056 + +0.3
155,060 + -1.4
155,069 - -0.8
155,091 - -0.6
155,127 + +0.1
155,216 + -0.5
155,226 + +0.1
155,231 - -0.9
155,239 + +0.9
155,249 + -0.6
155,349 + -0.6
155,354 - +2.6
155,365 - -0.9
155,366 - -0.2
155,380 + -0.0
155,389 + +0.7
155,391 - -1.5
155,392 - -1.3
155,394 - -0.6
155,404 + +0.1
155,502 + 9757 mRNA_1389 0.20 -0.7
155,503 - 9757 mRNA_1389 0.21 -0.5
155,527 - 9757 mRNA_1389 0.23 +1.4
155,533 - 9757 mRNA_1389 0.24 -0.7
155,544 - 9757 mRNA_1389 0.26 -0.4
155,576 + 9757 mRNA_1389 0.29 -1.6
155,663 + 9757 mRNA_1389 0.40 +1.3
155,667 - 9757 mRNA_1389 0.41 +0.4
155,678 + 9757 mRNA_1389 0.42 -0.5
155,679 - 9757 mRNA_1389 0.42 -3.2
155,685 + 9757 mRNA_1389 0.43 +0.2
155,687 - 9757 mRNA_1389 0.43 -0.8
155,690 - 9757 mRNA_1389 0.43 +1.4
155,696 - 9757 mRNA_1389 0.44 +1.0
155,715 - 9757 mRNA_1389 0.46 +0.3
155,749 + 9757 mRNA_1389 0.51 -0.5
155,764 + 9757 mRNA_1389 0.52 -0.1
155,816 + 9757 mRNA_1389 0.59 -2.5
155,834 - 9757 mRNA_1389 0.61 +0.2
155,853 + 9757 mRNA_1389 0.63 +0.1
155,859 - 9757 mRNA_1389 0.64 -0.8
155,861 - 9757 mRNA_1389 0.64 +1.4
155,861 + 9757 mRNA_1389 0.64 -1.2
155,861 - 9757 mRNA_1389 0.64 +0.0
155,861 + 9757 mRNA_1389 0.64 -0.1
155,866 - 9757 mRNA_1389 0.65 +2.4
155,872 + 9757 mRNA_1389 0.66 +0.1
155,876 + 9757 mRNA_1389 0.66 +1.2
155,878 + 9757 mRNA_1389 0.66 -2.4
155,887 + 9757 mRNA_1389 0.67 -1.0
155,998 - 9757 mRNA_1389 0.81 -0.2
156,021 + 9757 mRNA_1389 0.84 -0.5
156,156 + +0.3
156,157 - +2.2
156,173 + -0.1
156,723 - -1.9
156,876 - +0.1
156,887 + -0.4
156,905 + 9758 mRNA_1390 0.10 +0.1

Or see this region's nucleotide sequence