Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1397

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9764 and 9765 are separated by 278 nucleotides9765 and 9766 are separated by 909 nucleotides mRNA_1396: 9764 - Hypothetical Protein, at 172,419 to 173,406 9764 mRNA_1397: 9765 - K03242 EIF2S3 translation initiation factor 2 subunit 3, at 173,685 to 176,206 9765 mRNA_1398: 9766 - Hypothetical Protein, at 177,116 to 177,574 9766

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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172,797 - 9764 mRNA_1396 0.38 +0.8
172,804 + 9764 mRNA_1396 0.39 -0.4
172,907 + 9764 mRNA_1396 0.49 -1.5
172,969 - 9764 mRNA_1396 0.56 +0.2
173,113 - 9764 mRNA_1396 0.70 -2.5
173,270 - 9764 mRNA_1396 0.86 -1.1
173,376 - +2.2
176,304 + +0.7
176,312 + +0.1
176,482 + -0.5
176,611 - +1.6
176,626 + +0.2

Or see this region's nucleotide sequence