Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1448

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9816 and 9817 are separated by 377 nucleotides mRNA_1448: 9816 - KOG4159 Predicted E3 ubiquitin ligase, at 313,855 to 315,152 9816 mRNA_1449: 9817 - K03325 TC.ACR3 arsenite transporter, ACR3 family, at 315,530 to 317,378 9817

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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312,876 - +0.8
312,920 - +1.6
312,940 + -0.4
313,228 - -0.1
313,390 - -0.2
313,759 - +1.4
313,803 + -0.0
314,075 + 9816 mRNA_1448 0.17 -0.1
314,129 + 9816 mRNA_1448 0.21 -0.7
314,315 - 9816 mRNA_1448 0.35 -0.0
314,325 + 9816 mRNA_1448 0.36 -2.2
314,952 + 9816 mRNA_1448 0.85 +0.6
315,290 - -0.1
315,340 + -1.1
315,402 + -0.4
315,641 - -0.8
316,077 - 9817 mRNA_1449 0.30 -1.0
316,091 + 9817 mRNA_1449 0.30 -1.0
316,099 + 9817 mRNA_1449 0.31 +0.7

Or see this region's nucleotide sequence