Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1449

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9816 and 9817 are separated by 377 nucleotides9817 and 9818 are separated by 342 nucleotides mRNA_1448: 9816 - KOG4159 Predicted E3 ubiquitin ligase, at 313,855 to 315,152 9816 mRNA_1449: 9817 - K03325 TC.ACR3 arsenite transporter, ACR3 family, at 315,530 to 317,378 9817 mRNA_1450: 9818 - K20826 RPAP1 RNA polymerase II-associated protein 1, at 317,721 to 321,691 9818

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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314,952 + 9816 mRNA_1448 0.85 +0.6
315,290 - -0.1
315,340 + -1.1
315,402 + -0.4
315,641 - -0.8
316,077 - 9817 mRNA_1449 0.30 -1.0
316,091 + 9817 mRNA_1449 0.30 -1.0
316,099 + 9817 mRNA_1449 0.31 +0.7
316,203 + 9817 mRNA_1449 0.36 +1.4
316,827 + 9817 mRNA_1449 0.70 -0.4
316,952 - 9817 mRNA_1449 0.77 -0.3
316,957 + 9817 mRNA_1449 0.77 +0.3
316,977 + 9817 mRNA_1449 0.78 -0.1
316,980 + 9817 mRNA_1449 0.78 -1.4
316,980 + 9817 mRNA_1449 0.78 -0.3
317,144 + 9817 mRNA_1449 0.87 +0.0
317,264 - -0.1
317,266 + +0.3
317,284 + +0.9
317,305 - -0.1
317,403 - -0.1
317,414 + -0.9
317,421 + -0.0
317,423 - -0.1
317,432 + -0.2
317,432 + -1.1
317,434 + +0.0
317,449 + +0.3
317,451 - +0.3
317,452 + -1.7
317,488 - +0.2
317,502 - +0.2
317,534 + +0.2
317,553 + +0.2
317,555 + +2.5
317,557 - +0.3
317,561 + -0.0
317,563 + -0.5
317,683 - +1.0

Or see this region's nucleotide sequence