Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1469

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9837 and 9838 are separated by 707 nucleotides mRNA_1469: 9837 - KOG1200 Mitochondrial/plastidial beta-ketoacyl-ACP reductase, at 366,449 to 367,493 9837 mRNA_1470: 9838 - K18592 GGT1_5, CD224 gamma-glutamyltranspeptidase / glutathione hydrolase / leukotriene-C4 hydrolase, at 368,201 to 370,453 9838

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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365,481 + -0.2
365,482 - +1.5
365,482 + +0.3
365,483 + -0.5
365,485 - -0.5
365,496 - -0.7
365,505 + +0.2
365,506 - -0.0
365,506 + -0.1
365,506 - +2.0
365,536 - -0.7
365,625 - +0.7
365,642 - -1.1
365,653 + +0.3
365,660 - +0.1
365,669 - +1.1
365,687 - +0.5
366,677 - 9837 mRNA_1469 0.22 -0.3
367,617 - +1.3
367,619 + -0.9
367,687 + -1.3
367,721 + -1.0
367,721 - -2.2
367,852 - -0.6
367,867 - -0.1
368,014 + -0.7
368,037 + -1.7
368,131 - -2.1
368,146 - +0.1

Or see this region's nucleotide sequence