Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1578

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9945 and 9946 are separated by 336 nucleotides mRNA_1577: 9945 - K03844 ALG11 alpha-1,2-mannosyltransferase, at 637,857 to 639,925 9945 mRNA_1578: 9946 - K20237 NUD1 protein NUD1, at 640,262 to 646,467 9946

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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640,037 + -1.4
640,043 - -2.0
640,045 + +0.2
640,045 + +0.2
640,051 + -1.5
640,051 - -0.5
640,056 + +2.9
640,057 + +1.1
640,059 + -0.9
640,061 + +0.6
640,062 - -1.2
640,153 - -0.9
640,191 - +0.8
640,335 - -0.7
640,338 + -0.5
640,557 - +1.4
640,784 - -1.4
640,802 - -3.3
640,802 - -0.0
640,909 + 9946 mRNA_1578 0.10 -2.0
640,909 + 9946 mRNA_1578 0.10 +1.2
640,910 - 9946 mRNA_1578 0.10 +0.9
640,912 - 9946 mRNA_1578 0.10 -0.4
640,913 - 9946 mRNA_1578 0.10 +0.5
640,914 + 9946 mRNA_1578 0.11 +0.3
640,914 + 9946 mRNA_1578 0.11 +2.1
640,977 + 9946 mRNA_1578 0.12 -3.0
641,022 + 9946 mRNA_1578 0.12 -2.0
641,055 - 9946 mRNA_1578 0.13 -0.7
641,060 + 9946 mRNA_1578 0.13 +1.1
641,717 - 9946 mRNA_1578 0.23 -0.5
641,816 - 9946 mRNA_1578 0.25 -0.5
641,971 + 9946 mRNA_1578 0.28 -1.0
642,146 + 9946 mRNA_1578 0.30 -1.1
642,472 - 9946 mRNA_1578 0.36 +1.4
642,529 - 9946 mRNA_1578 0.37 -0.3
642,585 + 9946 mRNA_1578 0.37 +0.2
642,854 - 9946 mRNA_1578 0.42 -0.4
642,872 - 9946 mRNA_1578 0.42 +0.5
643,584 + 9946 mRNA_1578 0.54 -1.2
643,720 + 9946 mRNA_1578 0.56 -0.2
643,991 - 9946 mRNA_1578 0.60 -0.3
644,194 - 9946 mRNA_1578 0.63 +0.4
644,288 + 9946 mRNA_1578 0.65 -0.9
644,312 - 9946 mRNA_1578 0.65 +0.1
644,352 - 9946 mRNA_1578 0.66 +2.0
644,652 - 9946 mRNA_1578 0.71 +0.5
644,770 - 9946 mRNA_1578 0.73 +0.5
644,784 - 9946 mRNA_1578 0.73 +0.9
644,785 + 9946 mRNA_1578 0.73 -0.2
644,786 - 9946 mRNA_1578 0.73 -0.9
644,950 - 9946 mRNA_1578 0.76 +0.4
644,979 + 9946 mRNA_1578 0.76 -0.2
645,017 - 9946 mRNA_1578 0.77 -0.8
645,068 + 9946 mRNA_1578 0.77 +1.0
645,124 - 9946 mRNA_1578 0.78 -1.7
645,354 - 9946 mRNA_1578 0.82 -1.6
645,475 - 9946 mRNA_1578 0.84 +1.3
645,616 + 9946 mRNA_1578 0.86 -0.0
645,732 - 9946 mRNA_1578 0.88 -1.8
645,980 + -0.8
645,999 - -0.8
646,188 + +0.1
646,275 + -0.9
646,278 - -1.1
646,319 + +2.3
646,459 + +0.2
646,466 + +0.2
646,707 - +1.0
647,038 - +0.0
647,073 + -0.9
647,141 + -0.0
647,328 - +2.1
647,344 + -0.5

Or see this region's nucleotide sequence