Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1594

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9962 and 9963 are separated by 308 nucleotides mRNA_1594: 9962 - K16261 YAT yeast amino acid transporter, at 681,003 to 683,049 9962 mRNA_1595: 9963 - K13342 PEX5, PXR1 peroxin-5, at 683,358 to 685,744 9963

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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680,012 - -0.8
680,013 + +0.1
680,015 + +1.2
680,026 + +2.2
680,033 - -1.2
680,033 - -1.5
680,038 + +0.8
680,041 + +1.0
680,045 - -1.4
680,048 - -0.8
680,052 + +0.3
680,064 + +1.6
680,126 + -2.0
680,136 - -0.5
680,136 - +1.2
680,137 + +0.0
680,137 - -0.4
680,147 + +0.8
680,208 - +1.7
680,245 - -0.9
680,280 - +0.2
680,297 - +0.6
680,308 - -1.1
680,310 - +2.1
680,310 - +0.2
680,317 - +0.5
680,321 + -1.9
680,327 + -0.1
680,357 - +0.2
680,369 + +2.2
680,377 + -2.6
680,395 + -1.2
680,405 - -0.3
680,423 - -0.6
680,454 + -0.1
680,460 + +0.6
680,486 - -0.5
680,493 - -0.3
680,529 + -0.7
680,915 - -0.6
680,921 + -1.3
680,987 + +1.5
681,078 - -0.0
681,208 + 9962 mRNA_1594 0.10 -0.6
681,222 + 9962 mRNA_1594 0.11 +2.6
681,534 - 9962 mRNA_1594 0.26 -0.7
681,914 + 9962 mRNA_1594 0.45 -0.2
681,942 + 9962 mRNA_1594 0.46 +0.2
681,955 + 9962 mRNA_1594 0.47 +1.0
682,073 + 9962 mRNA_1594 0.52 +1.6
682,250 - 9962 mRNA_1594 0.61 +0.0
682,407 - 9962 mRNA_1594 0.69 +1.8
682,409 + 9962 mRNA_1594 0.69 +0.3
682,507 + 9962 mRNA_1594 0.73 -0.8
682,560 - 9962 mRNA_1594 0.76 +0.2
682,689 - 9962 mRNA_1594 0.82 -0.6
682,838 - 9962 mRNA_1594 0.90 +1.9
682,839 - 9962 mRNA_1594 0.90 +1.7
682,861 + +1.8
682,877 + -0.5
682,881 + +0.9
682,979 + +0.0
683,015 + -0.5
683,122 - -0.1
683,122 - -0.8
683,251 + -0.7
683,542 - -2.2

Or see this region's nucleotide sequence