Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1597

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9964 and 9965 are separated by 89 nucleotides9965 and 9966 are separated by 267 nucleotides mRNA_1596: 9964 - K14557 UTP6 U3 small nucleolar RNA-associated protein 6, at 686,125 to 688,577 9964 mRNA_1597: 9965 - Hypothetical Protein, at 688,667 to 689,443 9965 mRNA_1598: 9966 - Hypothetical Protein, at 689,711 to 690,052 9966

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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688,604 + -2.1
689,344 + 9965 mRNA_1597 0.87 +1.3
689,416 + +1.0
689,508 + +0.7
689,522 + -1.3
689,565 + +1.2
689,829 + 9966 mRNA_1598 0.35 +1.8
690,286 + -0.3

Or see this region's nucleotide sequence