Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1600

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9967 and 9968 are separated by 498 nucleotides9968 and 9969 are separated by 346 nucleotides mRNA_1599: 9967 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 690,460 to 691,819 9967 mRNA_1600: 9968 - K12178 COPS4, CSN4 COP9 signalosome complex subunit 4, at 692,318 to 693,945 9968 mRNA_1601: 9969 - HMMPfam-Protein of unknown function (DUF1682)-PF07946,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 694,292 to 695,992 9969

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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691,961 + +0.3
692,058 - -0.2
692,091 + +2.1
692,110 + +0.4
692,250 + +0.7
692,383 + -1.5
692,390 + -0.1
692,787 - 9968 mRNA_1600 0.29 -0.0
692,820 - 9968 mRNA_1600 0.31 -1.3
693,541 + 9968 mRNA_1600 0.75 -0.9
693,667 + 9968 mRNA_1600 0.83 -0.3
693,850 - +0.0
693,867 - +0.0
694,029 - +0.2
694,041 + +1.0
694,276 - +0.0
694,756 + 9969 mRNA_1601 0.27 -0.8

Or see this region's nucleotide sequence