Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1606

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9973 and 9974 are separated by 412 nucleotides9974 and 9975 are separated by 506 nucleotides mRNA_1605: 9973 - Hypothetical Protein, at 703,733 to 704,608 9973 mRNA_1606: 9974 - Hypothetical Protein, at 705,021 to 705,665 9974 mRNA_1607: 9975 - HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 706,172 to 709,618 9975

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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704,175 - 9973 mRNA_1605 0.50 -0.1
704,288 + 9973 mRNA_1605 0.63 +1.4
704,464 - 9973 mRNA_1605 0.83 +1.5
704,584 - -0.6
704,592 + +0.4
704,920 + +0.1
704,924 + +0.8
704,948 - +0.0
705,219 - 9974 mRNA_1606 0.31 -4.6
705,342 + 9974 mRNA_1606 0.50 +1.8
705,650 + -1.6
705,839 - +1.7
705,946 + +0.2
705,982 - +0.4
706,004 - +0.5
706,016 - -0.2
706,095 - +0.6
706,096 + -0.7
706,110 + -0.8
706,427 + -0.8
706,438 - +0.5
706,522 + 9975 mRNA_1607 0.10 +0.8

Or see this region's nucleotide sequence