Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1634

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10001 and 10002 are separated by 179 nucleotides mRNA_1633: 10001 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 762,446 to 764,135 10001 mRNA_1634: 10002 - HMMPfam-alpha/beta hydrolase fold-PF07859,ProSitePatterns-Lipolytic enzymes G-D-X-G family, putative serine active site.-PS01174,SUPERFAMILY--SSF53474, at 764,315 to 766,210 10002

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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763,319 - 10001 mRNA_1633 0.52 +2.7
763,686 - 10001 mRNA_1633 0.73 +0.0
763,697 - 10001 mRNA_1633 0.74 +0.6
764,029 + +2.5
764,245 - -1.0
764,261 + -0.5
764,263 - -2.0
764,263 - -1.1
764,269 - +0.5
764,430 - +0.9
764,821 - 10002 mRNA_1634 0.27 -0.5
765,148 - 10002 mRNA_1634 0.44 -0.9
765,427 - 10002 mRNA_1634 0.59 -1.4
765,517 - 10002 mRNA_1634 0.63 +1.7
765,529 - 10002 mRNA_1634 0.64 -1.5
765,547 - 10002 mRNA_1634 0.65 +0.8
765,652 + 10002 mRNA_1634 0.71 -0.1
765,710 + 10002 mRNA_1634 0.74 +0.1
765,863 + 10002 mRNA_1634 0.82 +0.5
766,005 - 10002 mRNA_1634 0.89 +1.2
766,210 + +0.4
766,315 + +0.1
766,328 - -1.1
766,600 + -0.0
766,603 + +0.4
766,908 - +1.2
766,909 + +1.0
766,909 + +0.3
767,051 + -1.3
767,053 - -1.4
767,178 - +0.8
767,189 - +0.5

Or see this region's nucleotide sequence