Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1660

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10027 and 10028 are separated by 167 nucleotides10028 and 10029 are separated by 90 nucleotides mRNA_1659: 10027 - K08741 MSH5 DNA mismatch repair protein MSH5, at 828,859 to 833,266 10027 mRNA_1660: 10028 - Hypothetical Protein, at 833,434 to 834,294 10028 mRNA_1661: 10029 - K13979 yahK uncharacterized zinc-type alcohol dehydrogenase-like protein, at 834,385 to 835,559 10029

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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832,455 - 10027 mRNA_1659 0.82 +0.8
832,595 + 10027 mRNA_1659 0.85 -0.7
832,635 - 10027 mRNA_1659 0.86 +1.1
832,738 - 10027 mRNA_1659 0.88 +0.9
832,785 + 10027 mRNA_1659 0.89 +0.6
832,895 - +0.7
833,026 + +0.2
833,027 - +0.0
833,066 - -0.6
833,193 - +1.0
833,328 - -0.6
833,332 - +2.1
833,345 - +0.1
833,370 + -1.3
833,471 + -1.1
833,506 + -0.0
833,523 - 10028 mRNA_1660 0.10 +0.3
833,659 + 10028 mRNA_1660 0.26 +0.9
833,805 + 10028 mRNA_1660 0.43 -0.5
833,930 + 10028 mRNA_1660 0.58 +1.9
833,931 - 10028 mRNA_1660 0.58 +1.2
834,479 - +2.0
834,543 - 10029 mRNA_1661 0.13 +0.4
834,553 + 10029 mRNA_1661 0.14 +2.3
834,634 + 10029 mRNA_1661 0.21 -0.2
834,974 - 10029 mRNA_1661 0.50 -1.5
835,255 + 10029 mRNA_1661 0.74 -0.6

Or see this region's nucleotide sequence