Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1667

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10034 and 10035 are separated by 379 nucleotides10035 and 10036 are separated by 957 nucleotides mRNA_1666: 10034 - HMMPfam-Nucleolar protein 12 (25kDa)-PF09805, at 840,920 to 841,915 10034 mRNA_1667: 10035 - K11527 K11527 two-component system, sensor histidine kinase and response regulator, at 842,295 to 847,609 10035 mRNA_1668: 10036 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 848,567 to 849,208 10036

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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842,070 + +0.5
842,149 + -1.0
842,225 + +0.6
842,641 + -0.2
843,229 + 10035 mRNA_1667 0.18 +0.9
843,257 - 10035 mRNA_1667 0.18 -1.6
843,695 - 10035 mRNA_1667 0.26 -0.3
843,818 - 10035 mRNA_1667 0.29 +0.8
843,956 - 10035 mRNA_1667 0.31 -1.3
844,439 + 10035 mRNA_1667 0.40 +0.5
844,560 - 10035 mRNA_1667 0.43 -0.8
844,712 + 10035 mRNA_1667 0.45 +0.0
844,986 - 10035 mRNA_1667 0.51 -0.3
845,166 + 10035 mRNA_1667 0.54 -0.5
845,243 + 10035 mRNA_1667 0.55 +1.0
845,294 + 10035 mRNA_1667 0.56 -0.5
846,035 - 10035 mRNA_1667 0.70 -0.4
846,054 - 10035 mRNA_1667 0.71 +0.1
846,152 - 10035 mRNA_1667 0.73 +0.6
846,153 + 10035 mRNA_1667 0.73 +1.5
846,192 - 10035 mRNA_1667 0.73 -0.4
846,326 - 10035 mRNA_1667 0.76 -1.7
846,329 + 10035 mRNA_1667 0.76 +1.2
846,478 - 10035 mRNA_1667 0.79 +1.4
846,752 - 10035 mRNA_1667 0.84 +0.6
846,915 - 10035 mRNA_1667 0.87 +1.8
847,097 - +0.8
847,359 + +1.2
847,638 + -0.0
847,640 - +0.2
847,668 + -2.2
847,740 - +0.3
847,780 - +0.9
847,949 + +1.4
847,954 + -0.1
847,961 - +1.8
847,970 - +0.4
848,100 + +0.5
848,116 - -1.1
848,128 - +0.9
848,225 - +1.4
848,242 + +1.7
848,247 - +0.2
848,248 + -1.0
848,250 - +3.0
848,258 - +1.8
848,269 - +0.8
848,279 + -0.0
848,380 + -0.5
848,392 + +0.5
848,394 - -0.8
848,394 + +0.6
848,406 - +0.1
848,418 - +0.3
848,543 - +1.8
848,582 - +0.1

Or see this region's nucleotide sequence