Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1677

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10045 and 10046 are separated by 133 nucleotides mRNA_1677: 10045 - K15620 GOLPH3, GPP34 golgi phosphoprotein 3, at 868,769 to 870,335 10045 mRNA_1678: 10046 - K09498 CCT6 T-complex protein 1 subunit zeta, at 870,469 to 873,019 10046

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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868,215 + +2.1
868,360 - -0.7
868,403 + -0.1
868,783 + -0.0
869,318 - 10045 mRNA_1677 0.35 -2.2
869,373 + 10045 mRNA_1677 0.39 +0.9
869,406 + 10045 mRNA_1677 0.41 +0.2
869,520 - 10045 mRNA_1677 0.48 +0.3
869,651 - 10045 mRNA_1677 0.56 +0.4
869,780 - 10045 mRNA_1677 0.65 +0.2
869,786 + 10045 mRNA_1677 0.65 +0.6
869,809 + 10045 mRNA_1677 0.66 +0.4
869,934 - 10045 mRNA_1677 0.74 +0.5
869,966 - 10045 mRNA_1677 0.76 +0.2
869,975 + 10045 mRNA_1677 0.77 -0.1
869,987 + 10045 mRNA_1677 0.78 +1.8
869,990 - 10045 mRNA_1677 0.78 +0.4
869,993 - 10045 mRNA_1677 0.78 +0.1
870,106 - 10045 mRNA_1677 0.85 -0.3
870,108 + 10045 mRNA_1677 0.85 -1.0
870,151 - 10045 mRNA_1677 0.88 -1.5
870,160 + 10045 mRNA_1677 0.89 -0.3
870,252 + +2.2
870,401 + +0.9
870,402 - +1.5
870,403 + +3.0
870,403 + +1.0
870,404 - -0.2
870,406 - +2.2
870,417 + -0.3
870,422 + +2.3
870,426 + +1.4
870,436 + +0.0
870,437 + +0.1

Or see this region's nucleotide sequence