Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1682

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10050 and 10051 are separated by 588 nucleotides mRNA_1682: 10050 - Hypothetical Protein, at 881,676 to 882,111 10050 mRNA_1683: 10051 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 882,700 to 883,622 10051

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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881,176 - +1.4
881,752 + 10050 mRNA_1682 0.17 +0.4
881,876 + 10050 mRNA_1682 0.46 +1.2
881,880 + 10050 mRNA_1682 0.47 +0.3
882,473 + -0.0
882,473 + +0.4
882,477 - -0.9
882,487 - +1.9
882,490 - +1.5
882,491 + +1.1

Or see this region's nucleotide sequence