Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1707

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10074 and 10075 overlap by 4 nucleotides mRNA_1706: 10074 - K08286 E2.7.11.- protein-serine/threonine kinase, at 343 to 1,191 10074 mRNA_1707: 10075 - BLAST related to SNF1-related protein kinase KIN10 [Melanop..., at 1,188 to 2,835 10075

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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215 + +0.0
220 - -1.0
234 + -0.3
254 - +0.3
283 + +1.4
304 + +1.1
322 + -0.1
324 + +0.3
427 + +1.6
453 + 10074 mRNA_1706 0.13 -0.4
465 - 10074 mRNA_1706 0.14 -1.2
482 + 10074 mRNA_1706 0.16 -0.8
493 - 10074 mRNA_1706 0.18 -1.0
647 + 10074 mRNA_1706 0.36 -2.3
683 - 10074 mRNA_1706 0.40 -1.0
809 + 10074 mRNA_1706 0.55 +1.7
842 - 10074 mRNA_1706 0.59 -0.8
844 + 10074 mRNA_1706 0.59 -1.4
848 - 10074 mRNA_1706 0.59 -1.7
902 + 10074 mRNA_1706 0.66 -0.2
949 - 10074 mRNA_1706 0.71 -1.4
949 - 10074 mRNA_1706 0.71 -0.0
950 + 10074 mRNA_1706 0.71 -0.2
974 - 10074 mRNA_1706 0.74 +0.4
1,016 + 10074 mRNA_1706 0.79 +1.5
1,065 + 10074 mRNA_1706 0.85 -0.7
1,118 + -0.2
1,142 + -0.5
1,155 + -0.0
1,272 - +0.0
1,281 + -0.8
1,573 + 10075 mRNA_1707 0.23 -0.4
1,625 + 10075 mRNA_1707 0.27 -1.6
1,625 + 10075 mRNA_1707 0.27 +0.7
1,628 + 10075 mRNA_1707 0.27 -0.6
1,646 + 10075 mRNA_1707 0.28 -0.1
1,649 - 10075 mRNA_1707 0.28 -1.1
1,680 + 10075 mRNA_1707 0.30 -1.4
1,781 + 10075 mRNA_1707 0.36 +0.1
1,926 + 10075 mRNA_1707 0.45 -0.9
1,996 + 10075 mRNA_1707 0.49 +0.6
2,005 - 10075 mRNA_1707 0.50 -0.7
2,010 - 10075 mRNA_1707 0.50 -0.0
2,033 + 10075 mRNA_1707 0.51 -0.6
2,068 + 10075 mRNA_1707 0.53 -2.1
2,076 + 10075 mRNA_1707 0.54 +0.4
2,209 - 10075 mRNA_1707 0.62 -0.0
2,352 + 10075 mRNA_1707 0.71 -0.7
2,449 - 10075 mRNA_1707 0.77 +0.3
2,472 - 10075 mRNA_1707 0.78 -2.0
2,475 + 10075 mRNA_1707 0.78 -1.2
2,501 + 10075 mRNA_1707 0.80 +1.7
2,923 + -0.2
3,038 - +0.5
3,062 + +0.5
3,198 - +0.5
3,200 + -0.1
3,208 + +0.9
3,333 + +0.2
3,347 - +0.8
3,348 - -0.1
3,381 + -0.1
3,459 + -0.0
3,634 - +0.4
3,791 + -0.4

Or see this region's nucleotide sequence