Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1735

Experiment: 40 hrs Low Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10102 and 10103 are separated by 963 nucleotides mRNA_1734: 10102 - KOG1721 FOG Zn-finger, at 67,947 to 72,087 10102 mRNA_1735: 10103 - K03235 EF3, TEF3 elongation factor 3, at 73,051 to 76,843 10103

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
remove
72,165 + +0.1
72,196 - +0.3
72,213 + -0.1
72,285 - +1.1
72,774 + -1.0
72,827 + -1.0
72,899 - -1.6
76,924 + +0.7
76,936 - +3.8
76,938 - -0.5
76,941 + -1.5
76,952 + +0.7
76,962 + +0.2
77,075 + -0.6
77,091 - -0.4
77,105 + +1.6
77,109 - -1.1
77,111 - +0.3
77,176 - +1.1
77,221 - +1.4
77,224 - -1.4
77,234 + +3.0
77,241 + +1.2
77,242 + +2.5
77,251 + -0.4
77,251 + +2.6
77,256 + +1.3
77,260 - -1.5
77,261 + -0.1
77,262 + -0.9
77,262 - +0.8
77,291 + +2.9
77,294 - -0.1
77,295 - +0.5
77,324 + +0.3
77,334 - +1.6
77,339 - +0.4
77,345 - +0.3
77,350 - +2.8
77,350 + +0.9
77,351 + +1.0
77,353 + +0.8
77,360 + +0.6
77,373 - +0.9
77,374 - -1.8
77,386 + -0.3
77,394 - -0.0
77,396 + +1.2
77,399 - +0.3
77,400 + +0.5
77,400 + +0.3
77,407 + +0.3
77,412 - -0.0
77,421 + +0.3
77,422 + -0.5
77,425 + +2.9
77,427 + -0.0
77,427 + +0.5
77,434 + +1.0
77,717 + +0.5
77,722 + +1.8

Or see this region's nucleotide sequence