Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1736

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10104 and 10105 are separated by 275 nucleotides mRNA_1736: 10104 - K01593 DDC aromatic-L-amino-acid decarboxylase, at 78,147 to 80,608 10104 mRNA_1737: 10105 - KOG1021 Acetylglucosaminyltransferase EXT1/exostosin 1, at 80,884 to 82,688 10105

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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77,176 - +1.1
77,221 - +1.4
77,224 - -1.4
77,234 + +3.0
77,241 + +1.2
77,242 + +2.5
77,251 + -0.4
77,251 + +2.6
77,256 + +1.3
77,260 - -1.5
77,261 + -0.1
77,262 + -0.9
77,262 - +0.8
77,291 + +2.9
77,294 - -0.1
77,295 - +0.5
77,324 + +0.3
77,334 - +1.6
77,339 - +0.4
77,345 - +0.3
77,350 - +2.8
77,350 + +0.9
77,351 + +1.0
77,353 + +0.8
77,360 + +0.6
77,373 - +0.9
77,374 - -1.8
77,386 + -0.3
77,394 - -0.0
77,396 + +1.2
77,399 - +0.3
77,400 + +0.5
77,400 + +0.3
77,407 + +0.3
77,412 - -0.0
77,421 + +0.3
77,422 + -0.5
77,425 + +2.9
77,427 + -0.0
77,427 + +0.5
77,434 + +1.0
77,717 + +0.5
77,722 + +1.8
77,976 - -1.3
78,120 - +0.9
78,287 - +0.2
78,617 + 10104 mRNA_1736 0.19 -0.5
78,775 - 10104 mRNA_1736 0.26 -0.3
78,889 - 10104 mRNA_1736 0.30 +1.8
78,898 - 10104 mRNA_1736 0.31 +0.5
78,927 - 10104 mRNA_1736 0.32 -0.2
79,189 + 10104 mRNA_1736 0.42 +1.1
79,335 + 10104 mRNA_1736 0.48 +0.9
79,343 - 10104 mRNA_1736 0.49 -0.4
79,374 - 10104 mRNA_1736 0.50 +0.3
79,382 + 10104 mRNA_1736 0.50 +0.8
79,606 - 10104 mRNA_1736 0.59 +1.8
80,622 - +0.4
80,625 - +0.1
80,669 - +0.4
80,789 + +0.1
80,790 - +0.2
80,795 - +0.4
80,803 - +2.3
80,842 + -1.1
80,970 + +1.8
81,115 + 10105 mRNA_1737 0.13 -2.3
81,237 - 10105 mRNA_1737 0.20 +0.3
81,252 + 10105 mRNA_1737 0.20 -0.0
81,257 + 10105 mRNA_1737 0.21 -0.2
81,292 + 10105 mRNA_1737 0.23 -0.2

Or see this region's nucleotide sequence