Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1780

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10147 and 10148 are separated by 675 nucleotides mRNA_1779: 10147 - KOG1336 Monodehydroascorbate/ferredoxin reductase, at 185,059 to 187,419 10147 mRNA_1780: 10148 - K03097 CSNK2A casein kinase II subunit alpha, at 188,095 to 190,025 10148

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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187,213 + -1.7
187,404 + +0.6
187,485 + +2.0
187,515 - -0.1
187,627 - -0.8
187,631 - -1.1
187,653 + +0.4
187,671 + +1.5
187,677 - -0.4
187,681 - -3.8
187,684 - -0.2
187,731 - +1.5
187,733 - -0.9
187,736 - +0.4
187,739 + -0.4
187,748 - -1.0
187,750 + -0.2
187,750 - -0.2
187,758 - -0.5
187,762 - +0.5
187,763 + +0.7
187,789 - +2.0
187,798 + -0.4
187,814 + +0.7
187,820 + -0.7
187,956 + -0.3
187,970 + -0.1
190,177 + +0.2
190,180 + +1.2
190,185 + -0.5
190,191 + +0.2
190,195 + -3.1
190,210 - -0.8
190,329 - +0.9
190,360 - +0.0
190,362 + +0.6
190,367 + -0.1
190,369 - -0.3
190,376 + +0.2
190,486 - +0.6
190,487 - +1.9
190,758 + +2.9
190,788 - -0.1
190,792 + +1.1
190,797 - +0.8
190,920 + +2.7
190,923 - -0.4

Or see this region's nucleotide sequence