Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1796

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10163 and 10164 are separated by 214 nucleotides10164 and 10165 are separated by 110 nucleotides mRNA_1795: 10163 - K12844 PRPF31 U4/U6 small nuclear ribonucleoprotein PRP31, at 217,358 to 219,404 10163 mRNA_1796: 10164 - K10878 SPO11 meiotic recombination protein SPO11, at 219,619 to 222,270 10164 mRNA_1797: 10165 - KOG2641 Predicted seven transmembrane receptor - rhodopsin family, at 222,381 to 224,884 10165

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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219,243 + +0.5
219,552 - +2.1
219,861 + +0.8
219,868 + -0.6
220,123 + 10164 mRNA_1796 0.19 +3.3
220,195 - 10164 mRNA_1796 0.22 +2.5
220,413 - 10164 mRNA_1796 0.30 -0.2
220,731 - 10164 mRNA_1796 0.42 +0.8
220,736 + 10164 mRNA_1796 0.42 +1.2
221,041 + 10164 mRNA_1796 0.54 +1.6
221,053 - 10164 mRNA_1796 0.54 +1.4
222,824 + 10165 mRNA_1797 0.18 +0.9
222,829 + 10165 mRNA_1797 0.18 +1.8
223,088 - 10165 mRNA_1797 0.28 +0.4
223,226 - 10165 mRNA_1797 0.34 -2.2

Or see this region's nucleotide sequence