Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1812

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10179 and 10180 are separated by 262 nucleotides10180 and 10181 are separated by 970 nucleotides mRNA_1811: 10179 - HMMPfam-Centrosome microtubule-binding domain of Cep57-PF06657, at 261,573 to 264,889 10179 mRNA_1812: 10180 - Hypothetical Protein, at 265,152 to 268,202 10180 mRNA_1813: 10181 - K04352 RASA1, RASGAP Ras GTPase-activating protein 1, at 269,173 to 274,604 10181

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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264,832 - -0.1
264,878 + -1.2
265,020 - +1.3
265,146 + +0.9
265,865 - 10180 mRNA_1812 0.23 +0.0
265,872 + 10180 mRNA_1812 0.24 +1.6
266,040 - 10180 mRNA_1812 0.29 +1.4
266,043 + 10180 mRNA_1812 0.29 +0.7
266,632 - 10180 mRNA_1812 0.49 +1.1
266,753 - 10180 mRNA_1812 0.52 +0.5
267,262 - 10180 mRNA_1812 0.69 +0.0
267,670 - 10180 mRNA_1812 0.83 +1.1
267,671 + 10180 mRNA_1812 0.83 +0.0
267,819 - 10180 mRNA_1812 0.87 +2.5
267,996 - +1.2
268,120 + +0.2
268,134 - +1.3
268,140 + +0.9
268,225 - +0.5
268,262 - +1.4
268,263 - +0.6
268,263 - -0.3
268,263 - +1.3
268,272 - +1.3
268,304 + -0.4
268,341 - -0.5
268,343 + +0.2
268,353 - +1.9
268,358 - +2.3
268,359 - +0.8
268,359 + +0.7
268,384 - -0.3
268,388 + +1.7
268,389 - -0.3
268,391 + +1.1
268,391 - +0.9
268,393 - +0.1
268,397 - +0.2
268,398 - -0.7
268,413 + +1.4
268,419 + +1.8
268,425 - +0.2
268,434 + +0.4
268,439 - -0.2
268,441 - +1.7
268,447 - +0.7
268,447 - +2.3
268,449 - -0.3
268,454 - +0.9
268,469 - +0.7
268,471 + +0.3
268,482 - +0.2
268,484 - +0.1
268,514 + +0.2
268,540 - -1.2
268,540 + +0.5
268,553 - +1.6
268,572 + +1.5
268,575 + +0.2
268,577 - -0.3
268,577 + +0.9
268,656 + +1.0
268,680 + -1.4
268,682 - +1.4
268,690 - +2.2
268,700 + -0.4
268,718 - -0.7
268,737 - -0.2
268,831 - +1.9
268,867 - -0.0
268,888 - +0.1
268,988 - +0.6
268,991 + +0.5
269,002 - +0.1
269,005 + +0.1
269,005 + +1.1
269,026 + -0.6
269,135 - +1.0
269,141 + +3.4

Or see this region's nucleotide sequence