Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1877

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10244 and 10245 are separated by 406 nucleotides10245 and 10246 are separated by 294 nucleotides mRNA_1876: 10244 - Hypothetical Protein, at 416,392 to 418,180 10244 mRNA_1877: 10245 - K03363 CDC20 cell division cycle 20, cofactor of APC complex, at 418,587 to 420,557 10245 mRNA_1878: 10246 - K01875 SARS, serS seryl-tRNA synthetase, at 420,852 to 422,750 10246

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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417,888 + 10244 mRNA_1876 0.84 +2.3
418,023 - -0.2
418,145 - +0.0
418,151 - -2.1
418,184 + -0.6
418,204 + -0.9
418,210 + +0.2
418,330 + +0.9
418,345 - +0.6
418,351 - -0.7
418,357 + +0.7
418,365 + +0.2
418,365 - +1.1
418,365 + -0.6
418,367 - -1.0
418,368 + +0.3
418,370 + +1.1
418,371 + +0.3
418,372 + -0.2
418,382 + +0.4
418,383 + -0.4
418,397 - -1.0
418,400 - +1.1
418,401 + +1.6
418,403 + -1.1
418,408 - +0.5
418,412 + -0.6
418,418 - -1.1
418,426 + -0.1
418,427 - +0.1
418,482 + -1.5
418,485 - +0.7
418,492 - -0.4
418,492 + -0.2
418,494 - +0.6
418,495 + +0.7
418,496 + +0.8
418,503 + -0.0
418,504 + -2.2
418,510 + -0.2
418,527 - -1.3

Or see this region's nucleotide sequence