Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1902

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10269 and 10270 are separated by 120 nucleotides mRNA_1901: 10269 - HMMPfam-Spo7-like protein-PF03907, at 468,442 to 470,059 10269 mRNA_1902: 10270 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 470,180 to 472,538 10270

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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469,707 + 10269 mRNA_1901 0.78 +1.0
469,797 - 10269 mRNA_1901 0.84 -0.8
469,970 - +0.9
469,975 + +0.3
470,044 - -0.0
470,133 - +0.3
470,202 - +1.6
470,382 - -0.6
470,383 - +1.9
470,438 + 10270 mRNA_1902 0.11 -0.4
470,454 - 10270 mRNA_1902 0.12 +0.5
471,120 + 10270 mRNA_1902 0.40 +2.0
471,162 - 10270 mRNA_1902 0.42 +0.8
471,409 - 10270 mRNA_1902 0.52 +0.2
471,650 + 10270 mRNA_1902 0.62 -0.8
471,650 + 10270 mRNA_1902 0.62 -1.2
471,841 + 10270 mRNA_1902 0.70 -0.2
472,194 - 10270 mRNA_1902 0.85 +0.1
472,320 + -1.1
472,476 - -0.7
472,825 + -0.3
473,028 + +2.9
473,143 + -0.7
473,336 + -0.5

Or see this region's nucleotide sequence