Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1914

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10281 and 10282 are separated by 309 nucleotides10282 and 10283 are separated by 552 nucleotides mRNA_1913: 10281 - K04564 SOD2 superoxide dismutase, Fe-Mn family, at 503,193 to 504,426 10281 mRNA_1914: 10282 - K07942 ARL1 ADP-ribosylation factor-like protein 1, at 504,736 to 505,677 10282 mRNA_1915: 10283 - K03063 PSMC4, RPT3 26S proteasome regulatory subunit T3, at 506,230 to 507,925 10283

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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504,493 - +0.1
504,499 - -0.1
504,507 + -0.6
504,526 + +0.3
504,537 + -0.2
504,645 + +0.3
504,651 + -0.6
504,659 - +0.2
504,668 + +0.1
504,792 + -0.2
504,810 + +1.6
504,942 - 10282 mRNA_1914 0.22 -0.3
505,404 - 10282 mRNA_1914 0.71 -0.1
505,802 + +0.2
505,829 - +1.8
505,970 - -0.4
505,972 + -0.0
505,981 + +0.9
505,983 - +0.6
506,160 - +0.7

Or see this region's nucleotide sequence