Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1954

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10321 and 10322 are separated by 115 nucleotides10322 and 10323 are separated by 998 nucleotides mRNA_1953: 10321 - K18442 ARFGEF, BIG brefeldin A-inhibited guanine nucleotide-exchange protein, at 594,483 to 601,309 10321 mRNA_1954: 10322 - Hypothetical Protein, at 601,425 to 602,462 10322 mRNA_1955: 10323 - KOG0379 Kelch repeat-containing proteins, at 603,461 to 605,817 10323

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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601,556 - 10322 mRNA_1954 0.13 +0.4
601,562 - 10322 mRNA_1954 0.13 +0.3
601,574 + 10322 mRNA_1954 0.14 -0.9
601,749 + 10322 mRNA_1954 0.31 -0.5
601,890 + 10322 mRNA_1954 0.45 -0.4
602,017 - 10322 mRNA_1954 0.57 +1.2
602,189 - 10322 mRNA_1954 0.74 +1.9
602,471 - -0.1
602,512 + -0.2
603,050 + +0.3
603,052 - -0.3
603,345 - +1.9
603,362 - +0.7
603,385 + -0.8

Or see this region's nucleotide sequence